文章名稱引用次數

• SCANPY: large-scale single-cell gene expression data analysis233
• OrthoFinder: phylogenetic orthology inference for comparative genomics143
• Improved metagenomic analysis with Kraken 2119
• Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data112
• Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression110
• PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells86
• Ten things you should know about transposable elements82
• From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy69
• Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics64
• Performance of neural network basecalling tools for Oxford Nanopore sequencing63